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2024
Banerjee, P.R., Holehouse, A.S., Kriwacki, R., Robustelli, P., Jiang, H., Sobolevsky, A., Hurley, J.M., Mendell, J.. (2024) "Dissecting the biophysics and biology of intrinsically disordered proteins (IDPs)," Trend in Biochemical Sciences 49 (2) Jankowski, M.S., Griffith, D., Shastry, D.G., Pelham, J.F., Ginell, G.M., Thomas, J., Karande, P., Holehouse, A.S., Hurley, J.M.. (2024) "Disordered clock protein interactions and charge blocks turn an hourglass into a persistent circadian oscillator," Nature Communication 15
2023
Clark, G.T., Hurley, J.M.. (2023) "Circadian Rhythms," Reference Module in the Life Sciences Pelham, J.F., Mosier, A.E., Altshuler, S.C., Rhodes, M.L., Kirchhoff, C.L., Fall, W.B., Mann, C., Baik, L.S., Chiu, J.C., Hurley, J.M.. (2023) "Conformational changes in the negative arm of the circadian clock correlate with dynamic interactomes involved in post-transcriptional regulation.," Cell Reports 42 (4)
2022
Clark, G.T., Yu, Y., Urban, C.A., Fu, G., Wang, C., Zhang, F., Linhardt, R.J., Hurley, J.M.. (2022) "Circadian Control of Heparan Sulfate Levels Times Phagocytosis of Amyloid Beta Aggregates," PLOS Genetic Cervantes-Silva, M.P., Carroll, R.G., Mieszko, M.W., Moreira, D., Cloe, A.P., O‘Siorain, J.R., Cox, S.L., Fagan, L.E., Klavina, P.A., He, Y., Drewinski, T., McGinley, A., Buel, S.M., Timmons, G.A., Early, J.O., Preston, R.S., Hurley, J.M., Finlay, D.K., Schoen, I., Sánchez-Garciá, F.J., Mills, K.H.G., Curtis, A.M. . (2022) "The circadian clock influences T cell responses to vaccination by regulating dendritic cell antigen processing," Nature Communications (1) Buel, S.M., Debopadhaya, S., De los Santos, H., Edwards, K.M., David, A.H., Dao, U.H., Bennett, K.P., Hurley, J.M. . (2022) "The PAICE Suite Reveals Circadian Post-Transcriptional Timing of Non-Coding RNAs and Spliceosome Components in Mus musculus Macrophages," G3 (9)
2021
Collins, E.J., Cervantes-Silva, M.P., Timmons, G.A., O’Siorain, J.R., Curtis, A.M., Hurley, J.M.. (2021) "Post-Transcriptional Circadian Regulation in Macrophages Organizes Temporally Distinct Immunometabolic States," Genome Research In Press
2018
Hurley JM, Jankowski MS, De los Santos H, Crowell AM, Fordyce SB, Zucker JD, Kumar N, Purvine SO, Robinson EW, Shukla A, Zink E, Cannon WR, Baker SE, Loros JJ, Dunlap JC. (2018) "Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways," Cell Syst. 7 (6), 613-626
2017
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB. (2017) "Guidelines for Genome-Scale Analysis of Biological Rhythm," J Biol Rhythms 32 (5), 380-393
2016
Dekhang R, Wu C, Smith KM, Lamb TM, Peterson M, Bredeweg EL, Ibarra O, Emerson JM, Karunarathna N, Lyubetskaya A, Azizi E, Hurely JM, Dunlap JC, Galagan JE, Freitag M, Sachs MS, Bell-Pedersen D. (2016) "The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell-Fusion," G3 (Bethesda)
2014
Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, Cheng C, Loros JJ, Dunlap JC. (2014) "Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential," Proc Natl Acad Sci U S A 111 (48), 16995-7002
2012
Rothenbacher FP, Suzuki M, Hurley JM, Montville TJ, Kirn TJ, Ouyang M, Woychik NA. (2012) "Clostridium difficile MazF toxin exhibits selective, not global, mRNA cleavage," J Bacteriol 194 (13), 3464-74
2010
Arbing MA, Handelman SK, Kuzin AP, Verdon G, Wang C, Su M, Rothenbacher FP, Abashidze M, Liu M, Hurley JM, Xiao R, Acton T, Inouye M, Montelione GT, Woychik NA, Hunt JF. (2010) "Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems," Structure 18 (8), 996-1010
2008
Kinzy TG, De Stefano LA, Esposito AM, Hurley JM, Roy R, Valentin-Acevedo AJ, Chang KH, Davila J, Defren JM, Donovan J, Irizarry-Barreto P, Soto A, Ysla RM, Copeland HL, Copeland PR. (2008) "A birth-to-death view of mRNA from the RNA recognition motif perspective," Biochem Mol Biol Educ 36 (1), 7-8
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